PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007578
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 232aa    MW: 26095 Da    PI: 5.2433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007578genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1888138255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  Cla007578  88 SYRGVRRRP-WGKFAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFSMRG 138
                69*******.**********422...25*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.80E-1987147No hitNo description
SuperFamilySSF541712.88E-2288148IPR016177DNA-binding domain
PfamPF008478.1E-1488138IPR001471AP2/ERF domain
SMARTSM003802.6E-3788152IPR001471AP2/ERF domain
PROSITE profilePS5103223.34188146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3088147IPR001471AP2/ERF domain
PRINTSPR003673.5E-1089100IPR001471AP2/ERF domain
PRINTSPR003673.5E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNSSFFHSQN ADLSPESSFG SFESLRWEGF QINGNSLPFN ENDSGEMLLH SLISEAAVYP  60
PENSPRQPPI KDEEVDSLGE EDPHKRKSYR GVRRRPWGKF AAEIRDSTRH GVRVWLGTFD  120
SAEAAALAYD QAAFSMRGPA AVLNFPVERV QESLKEMEMI NSAAYGGDGE GDSGSPVVAL  180
KRKHSMRKKF TRRKSKERDG IEKIENNVVV LEDLGSDYLE ELLKSSENLR PW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-2685147264ATERF1
2gcc_A3e-2685147264ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818440.0LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460636.11e-140PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC85e-67ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0A0LKN31e-128A0A0A0LKN3_CUCSA; Uncharacterized protein
STRINGPOPTR_0010s08300.15e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-59ethylene response factor 1